1
Daniel M Bartell: Computer software system, method, and product for scanned image alignment. Affymetrix, William R McCarthy III, Philip L McGarrigle, Alan B Sherr, December 7, 2004: US06829376 (18 worldwide citation)

An image alignment tool is described for adjusting the alignment of a grid with an image. An initial grid aligner determines an initial, approximately aligned, position of the grid. An intensity scorer determines, for each of a plurality of test grid elements of the plurality of grid elements, a set ...


2
Daniel M Bartell: Computer software system, method, and product for scanned image alignment. Affymetrix, William R McCarthy III, Philip L McGarrgle, Alan B Sherr, October 31, 2006: US07130458 (8 worldwide citation)

A computer program analyzes an image including features that correspond to emissions detected from a biological probe array. The program aligns one or more grids, each having one or more grid cells, with all or portions of the image; selects one or more grid cells to be associated with features base ...


3
Daniel M Bartell: Computer software system, method, and product for scanned image alignment. Affymetrix, William R McCarthy III, Philip L McGarrigle, Alan B Sherr, October 3, 2006: US07116809 (6 worldwide citation)

An image alignment tool is described for adjusting the alignment of a grid with an image. An initial grid aligner determines an initial, approximately aligned, position of the grid. An intensity scorer determines, for each of a plurality of test grid elements of the plurality of grid elements, a set ...


4
Dean S Burgi, Daniel M Bartell, Donald D Sleeter, Lucina P Mastro: System for analysis of x-ray films of nucleotide sequences. Genomyx Corporation, McDonnell Boehnen Hulbert & Berghoff, September 9, 1997: US05666435 (3 worldwide citation)

A system for identification of DNA bases in a nucleotide sequence includes a microprocessor and a set of executable instructions and is configured to accept a set of input data corresponding to a DNA sequence image from an autoradiograph. In part by interpolating a distribution of density peaks deri ...


5
Daniel M Bartell, Richard Watts: Methods, systems and computer software for detecting pixel stutter. Affymetrix, Wei Zhou, Philip L McGarrigle, June 14, 2005: US06907146 (1 worldwide citation)

Embodiments of the invention provide methods, computer software products and systems for detecting pixel stutter of a scanner. In one embodiment, a numeric count of stuttered pixels in both the x (row) and y (column) directions and a graphic display of the stuttered pixels overlaid on the image data ...


6
Daniel M Bartell: Computer software system, method, and product for scanned image alignment. Affymetrix, Affymetrix, March 31, 2005: US20050069189-A1

An image alignment tool is described for adjusting the alignment of a grid with an image. An initial grid aligner determines an initial, approximately aligned, position of the grid. An intensity scorer determines, for each of a plurality of test grid elements of the plurality of grid elements, a set ...


7
Daniel M Bartell: Computer software system, method, and product for scanned image alignment. Affymetrix a Corporation Organized under the laws of Delaware, Affymetrix, February 27, 2003: US20030038812-A1

A computer program analyzes an image including features that correspond to emissions detected from a biological probe array. The program aligns one or more grids, each having one or more grid cells, with all or portions of the image; selects one or more grid cells to be associated with features base ...


8
Daniel M Bartell, Xiaojun Di, Wei Min Liu, Shantanu V Kaushikkar: System, method and computer software product for grid placement, alignment and analysis of images of biological probe arrays. Affymetrix a Corporation Organized under the laws of Delaware, Affymetrix, January 8, 2004: US20040006431-A1

A system is described that associates grids with a probe array image based upon a positional placement of one or more control features, aligns the grids with one or more pixels based upon a metric value determined by one or more characteristics of the one or more pixels, and generates cell intensity ...


9
Daniel M Bartell: Computer software system, method, and product for scanned image alignment. Affymetrix, April 25, 2002: US20020047853-A1

An image alignment tool is described for adjusting the alignment of a grid with an image. An initial grid aligner determines an initial, approximately aligned, position of the grid. An intensity scorer determines, for each of a plurality of test grid elements of the plurality of grid elements, a set ...


10
Daniel M Bartell, Wei min Liu: Systems and computer software products for comparing microarray spot intensities. Chief IP Counsel Legal Dept, Affymetrix, August 8, 2002: US20020106117-A1

Methods, systems and computer software products are provided for analyzing gene expression data using pixel intensities.