1
Caleb Kennedy, Gregory J Porreca: Sequence assembly. Good Start Genetics, Thomas C Meyers, June 26, 2012: US08209130 (52 worldwide citation)

The invention relates to assembly of sequence reads. The invention provides a method for identifying a mutation in a nucleic acid involving sequencing nucleic acid to generate a plurality of sequence reads. Reads are assembled to form a contig, which is aligned to a reference. Individual reads are a ...


2
Caleb Kennedy, Niru Chennagiri: Methods and systems for storing sequence read data. Good Start Genetics, Brown Rudnick, Thomas C Meyers, January 3, 2017: US09535920

The present invention generally relates to storing sequence read data. The invention can involve obtaining a plurality of sequence reads from a sample, identifying one or more sets of duplicative sequence reads within the plurality of sequence reads, and storing only one of the sequence reads from e ...


3
Caleb Kennedy, Mark Umbarger, Gregory Porreca: Analysis methods. Good Start Genetics, Brown Rudnick, Thomas C Meyers, November 21, 2017: US09822409

The invention generally relates to methods for analyzing nucleic acids to identify novel mutations associated with diseases. In certain embodiments, methods of the invention involve obtaining nucleic acid from a subject having a disease, identifying at least one mutation in the nucleic acid, and com ...


4
Caleb Kennedy, Niru Chennagiri: Methods and systems for storing sequence read data. Good Start Genetics, Thomas C Meyers, Brown Rudnick, March 10, 2015: US08976049

The present invention generally relates to storing sequence read data. The invention can involve obtaining a plurality of sequence reads from a sample, identifying one or more sets of duplicative sequence reads within the plurality of sequence reads, and storing only one of the sequence reads from e ...